PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23443.9 Da    PI: 6.9362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-121047239
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    +i n s+r+  f +R n +lKKA+ELS LC++++ vii
  XP_011077904.1 10 QIANASKRNAIFGRRANSLLKKANELSLLCGVDIGVII 47
                    799**********************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-7163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.699147IPR002100Transcription factor, MADS-box
CDDcd002662.61E-15285No hitNo description
PRINTSPR004046.2E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-17394IPR002100Transcription factor, MADS-box
PfamPF003192.1E-121148IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAKRRIKHEQ IANASKRNAI FGRRANSLLK KANELSLLCG VDIGVIIHKQ GAENDSILWP  60
SPDAFEQRLY KFLDFSNFER AKKMVLHEQY LEKMISMESE YFLKSMKRTE FKESQQLLSE  120
VQQGKHLCQL DLYQLNCLNS TIDEMLKNLQ KKDNELNNEQ QQQQAQLFSL PPPPLLLPSP  180
GMAAAMQQEI GGNDQLFTGP MSEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077904.11e-150PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A022Q2115e-44A0A022Q211_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.12e-15M-type_MADS family protein